Repository 'package_samtools_0_1_19'
hg clone https://testtoolshed.g2.bx.psu.edu/repos/iuc/package_samtools_0_1_19

Changeset 3:05468758117c (2014-03-11)
Previous changeset 2:9f412e12b103 (2014-03-11) Next changeset 4:36aa94676939 (2014-03-11)
Commit message:
Uploaded
modified:
tool_dependencies.xml
b
diff -r 9f412e12b103 -r 05468758117c tool_dependencies.xml
--- a/tool_dependencies.xml Tue Mar 11 03:35:01 2014 -0400
+++ b/tool_dependencies.xml Tue Mar 11 15:28:01 2014 -0400
b
@@ -12,7 +12,8 @@
                         <package name="ncurses" version="5.9" />
                     </repository>
                 </action>
-                <action type="shell_command">sed -i.bak 's/-lcurses/-lncurses/' Makefile</action>
+                <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action>
+                <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/include/ncurses/ -L$NCURSES_LIB_PATH|g" Makefile</action>
                 <action type="shell_command">make</action>
                 <action type="move_file">
                     <source>samtools</source>