Galaxy | (sandbox for testing) |

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Molecule recognition (version 2.1.0)

PDF with molecules:

Output molecule format:

Print out confidence estimate:

(-p)

Adaptive thresholding pre-processing, useful for low light/low contrast images:

(-i)

Additional thinning/scaling down of low quality documents:

(-j)

What this tool does

OSRA (Optical Structure Recognition Application) is a utility designed to convert graphical representations of chemical structures, contained within a PDF file, into a SMILES or SDF representation.