Mercurial > repos > zzhou > spp_phantompeak

changeset 19:663ef5410dd7 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author zzhou
date Thu, 29 Nov 2012 13:50:59 -0500
parents 16ae2b869253
children
files spp_wrapper.py
diffstat 1 files changed, 0 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/spp_wrapper.py	Thu Nov 29 13:40:23 2012 -0500
+++ b/spp_wrapper.py	Thu Nov 29 13:50:59 2012 -0500
@@ -20,13 +20,6 @@
     output_default_file = sys.argv[7]
     script_path = sys.argv[8]
 
-    cmd = "tar -czvf spp_1.10.1.tar spp"
-    os.system(cmd)
-    cmd = "gzip spp_1.10.1.tar"
-    os.system(cmd)
-    cmd = "Rscript %s/deploy_spp.R" % script_path
-    os.system(cmd)
-
     #set file extensions and set mandatory options
     #========================================================================================    
     experiment_name = '_'.join( options['experiment_name'].split() ) #save experiment name
@@ -40,8 +33,6 @@
         subprocess.call(["cp", options['input_file'], input_file])
         cmdline = "%s -i=%s" % ( cmdline, input_file )
 
-    #test = "%s_VS_%s.narrowPeak.gz" %(chip_name, input_name)
-    #print test
     #set additional options
     #========================================================================================
     if (options['action'] == "cross_correlation"):