# HG changeset patch
# User zzhou
# Date 1354215059 18000
# Node ID 663ef5410dd74e9da15faf8e1b522f09f1b141b8
# Parent  16ae2b869253aca1ffe855d3cea0f31c14fecdf3
Uploaded

diff -r 16ae2b869253 -r 663ef5410dd7 spp_wrapper.py
--- a/spp_wrapper.py	Thu Nov 29 13:40:23 2012 -0500
+++ b/spp_wrapper.py	Thu Nov 29 13:50:59 2012 -0500
@@ -20,13 +20,6 @@
     output_default_file = sys.argv[7]
     script_path = sys.argv[8]
 
-    cmd = "tar -czvf spp_1.10.1.tar spp"
-    os.system(cmd)
-    cmd = "gzip spp_1.10.1.tar"
-    os.system(cmd)
-    cmd = "Rscript %s/deploy_spp.R" % script_path
-    os.system(cmd)
-
     #set file extensions and set mandatory options
     #========================================================================================    
     experiment_name = '_'.join( options['experiment_name'].split() ) #save experiment name
@@ -40,8 +33,6 @@
         subprocess.call(["cp", options['input_file'], input_file])
         cmdline = "%s -i=%s" % ( cmdline, input_file )
 
-    #test = "%s_VS_%s.narrowPeak.gz" %(chip_name, input_name)
-    #print test
     #set additional options
     #========================================================================================
     if (options['action'] == "cross_correlation"):