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6
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1 \name{output.binding.results}
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2 \alias{output.binding.results}
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3 %- Also NEED an '\alias' for EACH other topic documented here.
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4 \title{ Write out determined binding peaks into a text file table }
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5 \description{
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6 Writes out determined binding positions into a text file. The file
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7 will contain a table with each row corresponding to a detected
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8 position, with the following columns:
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9 \item{chr}{ chromosome or target sequence }
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10 \item{pos}{ position of detected binding site on the chromosome/sequence}
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11 \item{score}{a score reflecting magnitude of the binding}
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12 \item{Evalue}{E-value corresponding to the peak magnitude}
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13 \item{FDR}{FDR corresponding to the peak magnitude}
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14 \item{enrichment.lb}{lower bound of the fold-enrichment ratio}
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15 \item{enrichment.mle}{maximum likelihood estimate of the fold-enrichment ratio}
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16 }
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17 \usage{
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18 output.binding.results(results, filename)
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19 }
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20 %- maybe also 'usage' for other objects documented here.
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21 \arguments{
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22 \item{results}{ output of the \code{\link{find.binding.positions}} }
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23 \item{filename}{ file name }
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24 }
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