Mercurial > repos > zzhou > bamedit

diff tool_dependencies.xml @ 82:b92b622c1d02 draft

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Uploaded
author zzhou
date Mon, 26 Nov 2012 15:37:20 -0500
parents 76df7d2315bb
children 28d6956012d9
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line diff
--- a/tool_dependencies.xml	Mon Nov 26 15:31:07 2012 -0500
+++ b/tool_dependencies.xml	Mon Nov 26 15:37:20 2012 -0500
@@ -6,15 +6,15 @@
     <package name="samtools" version="0.1.12">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action>
+                <!--<action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action>
                 <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action>
-                <action type="shell_command">make</action>
+                <action type="shell_command">make</action>-->
                 <action type="move_file">
-                    <source>samtools</source>
+                    <source>$REPOSITORY_INSTALL_DIR/samtools</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="move_file">
-                    <source>misc/maq2sam-long</source>
+                    <source>$REPOSITORY_INSTALL_DIR/misc/maq2sam-long</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="set_environment">