Mercurial > repos > zzhou > bamedit

diff tool_dependencies.xml @ 99:a83e7618578c draft

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Uploaded
author zzhou
date Tue, 27 Nov 2012 16:01:15 -0500
parents efce52f9ede5
children eb383cd0f872
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Nov 27 15:53:46 2012 -0500
+++ b/tool_dependencies.xml	Tue Nov 27 16:01:15 2012 -0500
@@ -6,14 +6,13 @@
     <package name="samtools" version="0.1.12">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://ec2-184-73-120-244.compute-1.amazonaws.com/modENCODE_Galaxy/tool_dependencies/samtools/samtools</action>
+                <action type="download_by_url">http://ec2-184-73-120-244.compute-1.amazonaws.com/modENCODE_Galaxy/tool_dependencies/samtools/samtoolspkg.tar</action>
                 <action type="shell_command">chmod ago+x samtools</action>
+                <action type="shell_command">chmod ago+x maq2sam-long</action>
                 <action type="move_file">
                     <source>samtools</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
-                <action type="download_by_url">http://ec2-184-73-120-244.compute-1.amazonaws.com/modENCODE_Galaxy/tool_dependencies/samtools/maq2sam-long</action>
-                <action type="shell_command">chmod ago+x maq2sam-long</action>
                 <action type="move_file">
                     <source>maq2sam-long</source>
                     <destination>$INSTALL_DIR/bin</destination>