Mercurial > repos > zzhou > bamedit

diff bamedit.xml @ 80:a1a952275371 draft

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Uploaded
author zzhou
date Mon, 26 Nov 2012 15:31:01 -0500
parents 1a815a235ac5
children 49344231d676
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--- a/bamedit.xml	Mon Nov 26 15:30:55 2012 -0500
+++ b/bamedit.xml	Mon Nov 26 15:31:01 2012 -0500
@@ -6,10 +6,10 @@
 <tool id="BAM_Editor" name="BAMEdit" version="1.1.0">
   <requirements>
     <requirement type="set_environment">SCRIPT_PATH</requirement>
-    <!--<requirement type="package" version="0.1.12">samtools</requirement>-->
+    <requirement type="package" version="0.1.12">samtools</requirement>
   </requirements>
   <description>Merging, splitting, filtering, and QC of BAM files</description>
-  <command interpreter="python">bamedit.py $options_file bash \$SCRIPT_PATH/split.sh </command>
+  <command interpreter="python">bamedit.py $options_file \$SCRIPT_PATH</command>
   <inputs>
     <conditional name="input_type">
       <param name="input_type_selector" type="select" label="Select your BAM command">