Mercurial > repos > zzhou > bamedit

diff bamedit.py @ 39:9c3dfa4d0799 draft

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Uploaded
author zzhou
date Mon, 26 Nov 2012 13:29:53 -0500
parents f4111113bb5f
children 2f16cfc57586
line wrap: on
line diff
--- a/bamedit.py	Mon Nov 26 13:29:45 2012 -0500
+++ b/bamedit.py	Mon Nov 26 13:29:53 2012 -0500
@@ -13,7 +13,7 @@
 def main():
     options = simplejson.load( open( sys.argv[1] ) )
 
-    shscript = sys.argv[2]
+    shscript = options['path']
     plscript = "%s/pileup.pl" % os.environ.get('SCRIPT_PATH')
     print shscript
     if(options['action'] == "merge"):