Mercurial > repos > zzhou > bamedit

diff tool_dependencies.xml @ 88:67af3495e872 draft

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Uploaded
author zzhou
date Tue, 27 Nov 2012 11:17:07 -0500
parents 0f2402738f8a
children 94fa04d0c233
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line diff
--- a/tool_dependencies.xml	Tue Nov 27 10:52:43 2012 -0500
+++ b/tool_dependencies.xml	Tue Nov 27 11:17:07 2012 -0500
@@ -9,8 +9,8 @@
                 <!--<action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action>
                 <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action>
                 <action type="shell_command">make</action>-->
-		<action type="shell_command">cp -f samtools $INSTALL_DIR/bin</action>
-		<action type="shell_command">cp -f maq2sam-long $INSTALL_DIR/bin</action>
+		<action type="shell_command">cp samtools \$INSTALL_DIR/bin</action>
+		<action type="shell_command">cp maq2sam-long \$INSTALL_DIR/bin</action>
                 <!--<action type="move_file">
                     <source>samtools</source>
                     <destination>$INSTALL_DIR/bin</destination>