Mercurial > repos > zzhou > bamedit

diff bamedit.xml @ 37:51c714fcdb60 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author zzhou
date Mon, 26 Nov 2012 13:27:28 -0500
parents 7ba3c2c42a24
children b3101aaf4ce9
line wrap: on
line diff
--- a/bamedit.xml	Mon Nov 26 11:53:26 2012 -0500
+++ b/bamedit.xml	Mon Nov 26 13:27:28 2012 -0500
@@ -8,7 +8,7 @@
     <requirement type="package" version="0.1.12">samtools</requirement>
   </requirements>
   <description>Merging, splitting, filtering, and QC of BAM files</description>
-  <command interpreter="python">bamedit.py $options_file "\$SCRIPT_PATH/script.sh" "\$SCRIPT_PATH/pileup.pl"</command>
+  <command interpreter="python">bamedit.py $options_file str("\$SCRIPT_PATH/script.sh") str("\$SCRIPT_PATH/pileup.pl")</command>
   <inputs>
     <conditional name="input_type">
       <param name="input_type_selector" type="select" label="Select your BAM command">