Mercurial > repos > zzhou > bamedit

diff tool_dependencies.xml @ 86:4676ddbf80b9 draft

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Uploaded
author zzhou
date Tue, 27 Nov 2012 10:51:41 -0500
parents 7a4f480eb300
children 0f2402738f8a
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Nov 27 10:44:53 2012 -0500
+++ b/tool_dependencies.xml	Tue Nov 27 10:51:41 2012 -0500
@@ -9,14 +9,16 @@
                 <!--<action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action>
                 <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action>
                 <action type="shell_command">make</action>-->
-                <action type="move_file">
+		<action type="shell_command">cp -f samtools $INSTALL_DIR/bin</action
+		<action type="shell_command">cp -f maq2sam-long $INSTALL_DIR/bin</action
+                <!--<action type="move_file">
                     <source>samtools</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="move_file">
                     <source>maq2sam-long</source>
                     <destination>$INSTALL_DIR/bin</destination>
-                </action>
+                </action>-->
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>