Mercurial > repos > zzhou > bamedit

diff tool_dependencies.xml @ 92:291d24b1b5c5 draft

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Uploaded
author zzhou
date Tue, 27 Nov 2012 11:33:17 -0500
parents bf6b8378858c
children 647ad3fe070d
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Nov 27 11:29:16 2012 -0500
+++ b/tool_dependencies.xml	Tue Nov 27 11:33:17 2012 -0500
@@ -7,8 +7,10 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action>
-                <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action>
-                <action type="shell_command">make</action>
+                <!--<action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action>-->
+                <action type="shell_command">tar -xvf samtools-0.1.18.tar.bz2</action>
+                <action type="shell_command">make samtools-0.1.18/Makefile</action>
+                <action type="shell_command">make samtools-0.1.18/misc/Makefile</action>
                 <action type="move_file">
                     <source>samtools</source>
                     <destination>$INSTALL_DIR/bin</destination>