Mercurial > repos > zzhou > bamedit
comparison tool_dependencies.xml @ 104:6c6764cccdb4 draft default tip
Uploaded
| author | zzhou |
|---|---|
| date | Wed, 12 Dec 2012 15:12:00 -0500 |
| parents | dadb156c28e1 |
| children |
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| 103:dadb156c28e1 | 104:6c6764cccdb4 |
|---|---|
| 4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> | 4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> |
| 5 </set_environment> | 5 </set_environment> |
| 6 <package name="samtools" version="0.1.12"> | 6 <package name="samtools" version="0.1.12"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="shell_command">wget https://github.com/modENCODE-DCC/Galaxy/blob/master/tool_shed_dependencies/bamedit/samtoolspkg.tar</action> | 9 <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/tool_shed_dependencies/bamedit/samtoolspkg.tar</action> |
| 10 <action type="shell_command">chmod ago+x samtools</action> | 10 <action type="shell_command">chmod ago+x samtools</action> |
| 11 <action type="shell_command">chmod ago+x maq2sam-long</action> | 11 <action type="shell_command">chmod ago+x maq2sam-long</action> |
| 12 <action type="move_file"> | 12 <action type="move_file"> |
| 13 <source>samtools</source> | 13 <source>samtools</source> |
| 14 <destination>$INSTALL_DIR/bin</destination> | 14 <destination>$INSTALL_DIR/bin</destination> |