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comparison bamedit.xml @ 72:ef68dddc6c64 draft

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author zzhou
date Mon, 26 Nov 2012 15:00:07 -0500
parents 6e373fe6ba95
children 427ecc4d31c5
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71:ec59db4dc58e 72:ef68dddc6c64
7 <requirements> 7 <requirements>
8 <requirement type="set_enviornment">SCRIPT_PATH</requirement> 8 <requirement type="set_enviornment">SCRIPT_PATH</requirement>
9 <requirement type="package" version="0.1.12">samtools</requirement> 9 <requirement type="package" version="0.1.12">samtools</requirement>
10 </requirements> 10 </requirements>
11 <description>Merging, splitting, filtering, and QC of BAM files</description> 11 <description>Merging, splitting, filtering, and QC of BAM files</description>
12 <command interpreter="python">bamedit.py $options_file 'printenv SCRIPT_PATH'</command> 12 <command interpreter="python">bamedit.py $options_file bash \$SCRIPT_PATH/split.sh $bamouts1 $bamouts2 $input1</command>
13 <inputs> 13 <inputs>
14 <conditional name="input_type"> 14 <conditional name="input_type">
15 <param name="input_type_selector" type="select" label="Select your BAM command"> 15 <param name="input_type_selector" type="select" label="Select your BAM command">
16 <option value="merge">Merge BAM files</option> 16 <option value="merge">Merge BAM files</option>
17 <option value="split">Split BAM file</option> 17 <option value="split">Split BAM file</option>