Mercurial > repos > zzhou > bamedit
comparison tool_dependencies.xml @ 85:7a4f480eb300 draft
Uploaded
| author | zzhou |
|---|---|
| date | Tue, 27 Nov 2012 10:44:53 -0500 |
| parents | 28d6956012d9 |
| children | 4676ddbf80b9 |
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| 84:28d6956012d9 | 85:7a4f480eb300 |
|---|---|
| 8 <actions> | 8 <actions> |
| 9 <!--<action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action> | 9 <!--<action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action> |
| 10 <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action> | 10 <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action> |
| 11 <action type="shell_command">make</action>--> | 11 <action type="shell_command">make</action>--> |
| 12 <action type="move_file"> | 12 <action type="move_file"> |
| 13 <source>$REPOSITORY_INSTALL_DIR/samtools</source> | 13 <source>samtools</source> |
| 14 <destination>$INSTALL_DIR/bin</destination> | 14 <destination>$INSTALL_DIR/bin</destination> |
| 15 </action> | 15 </action> |
| 16 <action type="move_file"> | 16 <action type="move_file"> |
| 17 <source>$REPOSITORY_INSTALL_DIR/maq2sam-long</source> | 17 <source>maq2sam-long</source> |
| 18 <destination>$INSTALL_DIR/bin</destination> | 18 <destination>$INSTALL_DIR/bin</destination> |
| 19 </action> | 19 </action> |
| 20 <action type="set_environment"> | 20 <action type="set_environment"> |
| 21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 22 </action> | 22 </action> |