# HG changeset patch
# User yves
# Date 1327502503 18000
# Node ID e2fa0cd9457029830e6c7f57c19101a892a145e5
# Parent  8b5656463931104a1c928e0cbc5acd8fe461fd48
Uploaded

diff -r 8b5656463931 -r e2fa0cd94570 count_lines_in_file.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/count_lines_in_file.xml	Wed Jan 25 09:41:43 2012 -0500
@@ -0,0 +1,41 @@
+<tool id="count_lines_in_file" name="Count Lines in file">
+    <description>Count Lines in a file</description>
+    <command interpreter="perl">count_lines_in_file.pl $input_1 $output</command>
+
+    <inputs>
+        <param format="txt" name="input_1" type="data" label="Any text file"></param>
+    </inputs>
+
+    <outputs>
+        <data format="txt" name="output" />
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="input_1" value="matrix_generator_for_pc_and_lda_input_1.tabular"/>
+            <output name="output" file="matrix_generator_for_pc_and_lda_output.tabular"/>
+        </test>
+    </tests>
+
+    <help>
+
+.. class:: infomark
+
+**What it does**
+
+This tool counts lines in a txt file using the Y.W  alogirtm as described in Carrel et al., 2006 (PMID: 17009873)
+
+*Carrel L, Wetzels Y et al. (2006) Genomic Environment Predicts Expression Patterns on the Human     Inactive X Chromosom
+e. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151*
+
+-----
+
+**Example**
+
+- Input file (Source file First)
+
+
+
+</help>
+
+</tool>
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