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3
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1 <tool id="count_lines_in_file" name="Count Lines in file">
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2 <description>Count Lines in a file</description>
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3 <command interpreter="perl">count_lines_in_file.pl $input_1 $output</command>
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4
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5 <inputs>
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6 <param format="txt" name="input_1" type="data" label="Any text file"></param>
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7 </inputs>
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8
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9 <outputs>
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10 <data format="txt" name="output" />
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11 </outputs>
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12
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13 <tests>
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14 <test>
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15 <param name="input_1" value="matrix_generator_for_pc_and_lda_input_1.tabular"/>
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16 <output name="output" file="matrix_generator_for_pc_and_lda_output.tabular"/>
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17 </test>
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18 </tests>
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19
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20 <help>
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21
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22 .. class:: infomark
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23
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24 **What it does**
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25
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26 This tool counts lines in a txt file using the Y.W alogirtm as described in Carrel et al., 2006 (PMID: 17009873)
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27
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28 *Carrel L, Wetzels Y et al. (2006) Genomic Environment Predicts Expression Patterns on the Human Inactive X Chromosom
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29 e. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151*
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30
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31 -----
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32
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33 **Example**
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34
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35 - Input file (Source file First)
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36
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37
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38
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39 </help>
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40
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41 </tool> |
