# HG changeset patch
# User soh.ishiguro3914@gmail.com
# Date 1416559245 -32400
# Node ID f4b4030709eb1f714482c176309e27027b1a594d
# Parent  ff0439a80cdd1c3eb438fd13076c046cdadaf6ef
fixed output

diff -r ff0439a80cdd -r f4b4030709eb samtools_v1_1.xml
--- a/samtools_v1_1.xml	Fri Nov 21 17:06:40 2014 +0900
+++ b/samtools_v1_1.xml	Fri Nov 21 17:40:45 2014 +0900
@@ -3,7 +3,8 @@
     <requirement type="package" version="1.1">samtools</requirement>
   </requirements>
   <description>samtools version 1.1.</description>
-  <command interpreter="samtools index">$inputfile</command>
+  <command interpreter="samtools index">$inputfile
+  2&gt;&amp;1 </command>
   <inputs>
     <conditional name="command_type">
       <param name="command_type" type="select" label="Execute samtools command">