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comparison sniffles.xml @ 1:ba3aaae7a229 draft default tip

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planemo upload for repository https://github.com/youyuh48/galaxy-tools/tree/master/tools/sniffles
author youyuh48
date Fri, 06 Sep 2019 02:15:16 -0400
parents ee65e517769d
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0:ee65e517769d 1:ba3aaae7a229
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.0.11">sniffles</requirement> 4 <requirement type="package" version="1.0.11">sniffles</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"> 6 <command detect_errors="exit_code">
7 <![CDATA[ 7 <![CDATA[
8 ln -f -s '$input' input.bam &&
8 sniffles 9 sniffles
9 -t \${GALAXY_SLOTS:-2} 10 -t \${GALAXY_SLOTS:-2}
10 -m '$input' 11 -m input.bam
11 --${output_format} '$output' 12 --${output_format} '$output'
12 ## general_options 13 ## general_options
13 #if $general_options.s: 14 #if $general_options.s:
14 -s $general_options.s 15 -s $general_options.s
15 #end if 16 #end if