|
1
|
1 <tool id="xlsx2tab_R" name="XLSX sheet to Tabular" version="0.1">
|
|
|
2 <requirements>
|
|
|
3 <requirement type="package" version="3.2.1">R</requirement>
|
|
|
4 <requirement type="package" version="1.1.0">r-readxl</requirement>
|
|
|
5 </requirements>
|
|
|
6 <command detect_errors="exit_code"><![CDATA[
|
|
|
7 Rscript '$__tool_directory__/xlsx2tab.R' '$input1' '$sheet' '$output' ]]>
|
|
|
8 </command>
|
|
|
9 <inputs>
|
|
|
10 <param format="xlsx" name="input1" type="data" label="XLSX file"/>
|
|
|
11 <param name="sheet" type="text" label="Excel sheet name" value="biodiv_data">
|
|
|
12 <sanitizer sanitize="False"/>
|
|
|
13 </param>
|
|
|
14
|
|
|
15 </inputs>
|
|
|
16
|
|
|
17 <outputs>
|
|
|
18 <data format="tabular" name="output" from_work_dir="out.tabular" />
|
|
|
19 </outputs>
|
|
|
20
|
|
|
21 <tests>
|
|
|
22 <test>
|
|
|
23 <param name="input1" value="example_csv.csv"/>
|
|
|
24 <param name="sheet" value=","/>
|
|
|
25 <output name="output" file="out.tabular"/>
|
|
|
26 </test>
|
|
|
27 </tests>
|
|
|
28
|
|
|
29 <help>
|
|
|
30 **What it does**
|
|
|
31
|
|
|
32 Extract a sheet from XLSX file to a tabular file.
|
|
|
33
|
|
|
34
|
|
|
35 ------
|
|
|
36
|
|
|
37 **Example**
|
|
|
38
|
|
|
39 Input XLSX sheet
|
|
|
40
|
|
|
41
|
|
|
42
|
|
|
43 Output tabular :
|
|
|
44
|
|
|
45 "John" "Smith" "2 mySteet, myCity"
|
|
|
46
|
|
|
47 "François" "LeFrançais" "1 rue du Général, Paris"
|
|
|
48
|
|
|
49 "Other" "Random" "Stuff, stuff, stuff"
|
|
|
50
|
|
|
51 ------
|
|
|
52
|
|
|
53 **Arguments**
|
|
|
54
|
|
|
55 Input : xlsx file.
|
|
|
56
|
|
|
57
|
|
|
58
|
|
|
59
|
|
|
60 </help>
|
|
|
61 </tool>
|
