Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam

changeset 11:dd96b65174df

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Uploaded
author yhoogstrate
date Thu, 19 Dec 2013 07:11:05 -0500
parents 29ac0abd267e
children 50ab1eb510d8
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Dec 17 10:51:58 2013 -0500
+++ b/tool_dependencies.xml	Thu Dec 19 07:11:05 2013 -0500
@@ -21,7 +21,7 @@
 	<package name="VarScan" version="2.3.6">
 		<install version="1.0">
 			<actions>
-				<action type="download_by_url">http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.6.jar</action>
+				<action type="shell_command">wget http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.6.jar</action>
 				<action type="move_file">
 					<source>VarScan.v2.3.6.jar</source>
 					<destination>$INSTALL_DIR/bin</destination>