Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam
changeset 54:8d1ddd8eb2b5 draft
Uploaded
| author | yhoogstrate |
|---|---|
| date | Wed, 05 Mar 2014 09:39:25 -0500 |
| parents | 77578b1e98e4 |
| children | 3296b5c8a968 |
| files | varscan_mpileup2snp_from_bam.xml |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/varscan_mpileup2snp_from_bam.xml Wed Mar 05 09:36:09 2014 -0500 +++ b/varscan_mpileup2snp_from_bam.xml Wed Mar 05 09:39:25 2014 -0500 @@ -84,10 +84,11 @@ #end if --output-vcf $varscan_output_vcf + 2> stderr_2.txt #if $sort_mpileup == "true" | sort -k 1,1 -k 2,2 #end if - 2> stderr_2.txt ; + > $snv_output ; echo "-------------------------[ mpileup generation ]-------------------------" ; echo "" ;