# HG changeset patch
# User yhoogstrate
# Date 1394032245 18000
# Node ID d29384007de7aac614a3b8faa3244a854d2ff493
# Parent  5109a0f2cb25c9aec38a9222fdbc973e388169e6
Uploaded

diff -r 5109a0f2cb25 -r d29384007de7 varscan_mpileup2snp.xml
--- a/varscan_mpileup2snp.xml	Wed Mar 05 10:03:06 2014 -0500
+++ b/varscan_mpileup2snp.xml	Wed Mar 05 10:10:45 2014 -0500
@@ -22,7 +22,12 @@
 				$varscan_variants
 		#end if
 		
-		 --output-vcf $varscan_output_vcf
+		#if $varscan_output_vcf
+			 --output-vcf 0 
+		#else
+			--output-vcf 0 
+		#end if
+		
 		 2> stderr.txt 
 		 > $snv_output ;
 		 cat stderr.txt