# HG changeset patch # User yhoogstrate # Date 1387273278 18000 # Node ID d0cd5668ec6becf585b8e9f1d66620b208a435e0 # Parent 212cc602c073a97f0201c491428a84060bcf3735 Uploaded diff -r 212cc602c073 -r d0cd5668ec6b tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Dec 17 04:41:18 2013 -0500 @@ -0,0 +1,39 @@ + + + + + + svn checkout https://github.com/mydatascience/parallel-mpileup/trunk samtools-mpileup-parallel && cd samtools-mpileup-parallel && cd $(ls |grep samtools-) && make && cp samtools ../samtools-mpileup-parallel && ls -als && cd .. && ls -als + + bin/samtools + $INSTALL_DIR/bin + + + $INSTALL_DIR/bin + $REPOSITORY_INSTALL_DIR + + + + + Downloads and installs a modified version of samtools, able to paralellize the mpileup function. + + + + + + wget http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.6.jar + + VarScan.v2.3.6.jar + $INSTALL_DIR/bin + + + $INSTALL_DIR/bin + $REPOSITORY_INSTALL_DIR + + + + + Downloads VarScan2. + + +