# HG changeset patch
# User yhoogstrate
# Date 1400592478 14400
# Node ID 74c06a2e4a6957ae3f18f5780644e9486945bfc9
# Parent  bc398d6bac85604db4965a36fae905116f1be3de
Uploaded

diff -r bc398d6bac85 -r 74c06a2e4a69 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue May 20 09:19:36 2014 -0400
+++ b/tool_dependencies.xml	Tue May 20 09:27:58 2014 -0400
@@ -1,22 +1,23 @@
 <?xml version="1.0"?>
 <tool_dependency>
 	
-	<package name="ncurses" version="5.9">
+	<!--<package name="ncurses" version="5.9">
 		<repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-	</package>
+	</package>-->
 	
-	<!-- Optimized samtools (for threaded mpileup) -->
 	<package name="samtools_parallel_mpileup" version="0.1.19">
 		<install version="1.0">
 			<actions>
-				<action type="set_environment_for_install">
+				
+				<!--<action type="set_environment_for_install">
 					<repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
 						<package name="ncurses" version="5.9" />
 					</repository>
-				</action>
+				</action>-->
+				
 				<action type="shell_command">svn checkout https://github.com/yhoogstrate/parallel-mpileup/trunk samtools-parallel-mpileup &amp;&amp; cd samtools-parallel-mpileup</action>
-				<action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action>
-				<action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action>
+				<action type="shell_command">sed -i.bak 's/-lcurses/-lncurses/' Makefile</action>
+				<!-- <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action>-->
 				<action type="shell_command">cd samtools-parallel-mpileup &amp;&amp; cd $(ls |grep samtools-) &amp;&amp; make &amp;&amp; cp samtools ../samtools-parallel-mpileup</action>
 				<action type="move_file">
 					<source>samtools-parallel-mpileup</source>