# HG changeset patch
# User yhoogstrate
# Date 1400659021 14400
# Node ID 6c5125c08e74db9ece5a1883c3f4e2bd59813dce
# Parent  74c06a2e4a6957ae3f18f5780644e9486945bfc9
Uploaded

diff -r 74c06a2e4a69 -r 6c5125c08e74 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue May 20 09:27:58 2014 -0400
+++ b/tool_dependencies.xml	Wed May 21 03:57:01 2014 -0400
@@ -1,26 +1,33 @@
 <?xml version="1.0"?>
 <tool_dependency>
 	
-	<!--<package name="ncurses" version="5.9">
+	<package name="ncurses" version="5.9">
 		<repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-	</package>-->
+	</package>
 	
 	<package name="samtools_parallel_mpileup" version="0.1.19">
 		<install version="1.0">
 			<actions>
 				
-				<!--<action type="set_environment_for_install">
+				<action type="set_environment_for_install">
 					<repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
 						<package name="ncurses" version="5.9" />
 					</repository>
-				</action>-->
+				</action>
+				
+				<action type="shell_command">
+				svn checkout https://github.com/yhoogstrate/parallel-mpileup/trunk samtools-parallel-mpileup ;
+				
+				cd samtools-parallel-mpileup ;
+				cd $(ls |grep samtools-) ;
 				
-				<action type="shell_command">svn checkout https://github.com/yhoogstrate/parallel-mpileup/trunk samtools-parallel-mpileup &amp;&amp; cd samtools-parallel-mpileup</action>
-				<action type="shell_command">sed -i.bak 's/-lcurses/-lncurses/' Makefile</action>
-				<!-- <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action>-->
-				<action type="shell_command">cd samtools-parallel-mpileup &amp;&amp; cd $(ls |grep samtools-) &amp;&amp; make &amp;&amp; cp samtools ../samtools-parallel-mpileup</action>
+				sed -i 's/-lcurses/-lncurses/' Makefile ;
+                sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile ;
+				
+				make ;
+				cp samtools ../samtools-parallel-mpileup</action>
 				<action type="move_file">
-					<source>samtools-parallel-mpileup</source>
+					<source>samtools-parallel-mpileup/samtools-parallel-mpileup</source>
 					<destination>$INSTALL_DIR/bin</destination>
 				</action>
 				<action type="set_environment">