# HG changeset patch
# User yhoogstrate
# Date 1394034731 18000
# Node ID 38ea7a0450bc7c254e4620062c166e88a3975d71
# Parent  34b5f8c5c16ea45a9a36606b19683546c3370624
Uploaded

diff -r 34b5f8c5c16e -r 38ea7a0450bc varscan_mpileup2snp.xml
--- a/varscan_mpileup2snp.xml	Wed Mar 05 10:23:12 2014 -0500
+++ b/varscan_mpileup2snp.xml	Wed Mar 05 10:52:11 2014 -0500
@@ -32,7 +32,7 @@
 	</command>
 	
 	<inputs>
-		<param format="mpileup" name="mpileup_input" type="data" label="Alignment file" help="Mapped reads in mpileup format."/>
+		<param format="pileup" name="mpileup_input" type="data" label="Alignment file" help="Mapped reads in mpileup format."/><!-- datatype "mpileup" does not exist.. it seems to be common to use pileup instead? -->
 		
 		<conditional name="extended_parameters">
 			<param name="parameters" type="select" label="VarScan parameters" help="For more advanced VarScan settings.">
@@ -66,7 +66,7 @@
 	
 	<tests>
 		<test>
-			<param name="mpileup_input" value="hg19_mutant.mpileup" dbkey="hg19" ftype="mpileup" />
+			<param name="mpileup_input" value="hg19_mutant.mpileup" dbkey="hg19" ftype="pileup" />
 			<param name="parameters" value="default" />
 			<param name="varscan_output_vcf" value="1" />