# HG changeset patch
# User yhoogstrate
# Date 1394032992 18000
# Node ID 34b5f8c5c16ea45a9a36606b19683546c3370624
# Parent  0bab34a58764b13880190369b01fac47ba5ad3a1
Uploaded

diff -r 0bab34a58764 -r 34b5f8c5c16e varscan_mpileup2snp_from_bam.xml
--- a/varscan_mpileup2snp_from_bam.xml	Wed Mar 05 10:23:06 2014 -0500
+++ b/varscan_mpileup2snp_from_bam.xml	Wed Mar 05 10:23:12 2014 -0500
@@ -89,9 +89,7 @@
 			#end if
 			
 			#if $varscan_output_vcf
-			 --output-vcf 0 
-			#else
-			 --output-vcf 0 
+			 --output-vcf 1 
 			#end if
 			
 			 2> stderr_2.txt