# HG changeset patch
# User yhoogstrate
# Date 1391087546 18000
# Node ID 04fa4c3955f711ab2f06d7ae60e877865c23482c
# Parent  324717caecb855a19847a1e3d2914ff3ea767641
Uploaded

diff -r 324717caecb8 -r 04fa4c3955f7 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jan 30 08:06:18 2014 -0500
+++ b/tool_dependencies.xml	Thu Jan 30 08:12:26 2014 -0500
@@ -21,8 +21,7 @@
 	<package name="VarScan" version="2.3.6">
 		<install version="1.0">
 			<actions>
-				<action type="shell_command">wget http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.6.jar</action>
-				<action type="shell_command">cp VarScan.v2.3.6.jar ../</action>
+				<action type="shell_command">wget http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.6.jar --output-file="VarScan/VarScan.v2.3.6.jar"</action>
 				<action type="move_file">
 					<source>VarScan.v2.3.6.jar</source>
 					<destination>$INSTALL_DIR/bin</destination>