Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam

diff samtools-parallel-mpileup.xml @ 42:bf9c5a61b200

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
overwrite readonly files
author yhoogstrate <y.hoogstrate@erasmusmc.nl>
date Wed, 05 Mar 2014 13:34:36 +0100
parents 48c78adade03
children c800d09b8cc3
line wrap: on
line diff
--- a/samtools-parallel-mpileup.xml	Wed Mar 05 07:15:04 2014 -0500
+++ b/samtools-parallel-mpileup.xml	Wed Mar 05 13:34:36 2014 +0100
@@ -182,7 +182,7 @@
 	
 	<tests>
 		<test><!-- Use classical samtools -->
-			<param name="alignments" value="hg19_mutant.bam" dbkey="hg19" />
+			<param name="alignments" value="hg19_mutant.bam.txt" dbkey="hg19" />
 			<param name="reference_genome_source.source_select" value="attribute" />
 			<param name="extended_parameters_regions.samtools_regions" value="entire_genome" />
 			
@@ -195,7 +195,7 @@
 			<output name="output" file="hg19_mutant.mpileup" /> 
 		</test>
 		<test><!-- Use parallelized samtools -->
-			<param name="alignments" value="hg19_mutant.bam" dbkey="hg19" />
+			<param name="alignments" value="hg19_mutant.bam.txt" dbkey="hg19" />
 			<param name="reference_genome_source.source_select" value="attribute" />
 			<param name="extended_parameters_regions.samtools_regions" value="entire_genome" />