Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam

diff samtools-parallel-mpileup.xml @ 51:11292b6c3c6c draft

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author yhoogstrate
date Wed, 05 Mar 2014 08:47:37 -0500
parents cdc2a480cb1b
children b2dc8ab51a79
line wrap: on
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--- a/samtools-parallel-mpileup.xml	Wed Mar 05 08:03:59 2014 -0500
+++ b/samtools-parallel-mpileup.xml	Wed Mar 05 08:47:37 2014 -0500
@@ -182,7 +182,7 @@
 	
 	<tests>
 		<test><!-- Use classical samtools -->
-			<param name="alignments" value="hg19_mutant.bam.txt" dbkey="hg19" />
+			<param name="alignments" value="hg19_mutant.bam.txt" dbkey="hg19" ftype="bam" />
 			<param name="reference_genome_source.source_select" value="attribute" />
 			<param name="extended_parameters_regions.samtools_regions" value="entire_genome" />
 			
@@ -195,7 +195,7 @@
 			<output name="output" file="hg19_mutant.mpileup" /> 
 		</test>
 		<test><!-- Use parallelized samtools -->
-			<param name="alignments" value="hg19_mutant.bam.txt" dbkey="hg19" />
+			<param name="alignments" value="hg19_mutant.bam.txt" dbkey="hg19" ftype="bam" />
 			<param name="reference_genome_source.source_select" value="attribute" />
 			<param name="extended_parameters_regions.samtools_regions" value="entire_genome" />