Mercurial > repos > yhoogstrate > show_metadata

annotate show_metadata.xml @ 0:22e1aa3810e5 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
author yhoogstrate
date Fri, 16 Oct 2015 05:25:32 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
1 <tool id="show_metadata" name="Show Metadata" version="1.0.0">
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
2 <description>Debugging utility: show all metadata of a history item</description>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
3 <command><![CDATA[
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
4 #for $metadata_element, $metadata_value in $input.metadata.items()
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
5 echo "$metadata_element: $metadata_value" >> $output ;
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
6 #end for
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
7 ]]></command>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
8 <inputs>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
9 <param name="input" type="data" label="File to scan for all metadata" />
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
10 </inputs>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
11 <outputs>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
12 <data format="txt" name="output" label="${tool.name} on ${input.name}" />
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
13 </outputs>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
14 <tests>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
15 <test>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
16 <param name="input" value="test1.tabular" ftype="tabular" dbkey="hg19" />
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
17 <output name="output" file="test1.metadata_report"/>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
18 </test>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
19 </tests>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
20
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
21 <help><![CDATA[
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
22 ** What it does? **
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
23
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
24 Shows all the metadata elements of a history item.
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
25 ]]></help>
22e1aa3810e5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/show_metadata_galaxy_wrapper commit fcf4e484bf0863eed93831fc582c1c424a4fbc7b-dirty
yhoogstrate
parents:
diff changeset
26 </tool>