Mercurial > repos > yhoogstrate > segmentation_fold

changeset 16:7e5b96d45f8d draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit c6608bd5256e5c54cb2e01be6c184da0d2b08a7c-dirty
author yhoogstrate
date Thu, 19 May 2016 05:41:48 -0400
parents 5de95e0173a7
children ad0af5e19601
files segmentation-fold.xml tool_dependencies.xml utils_add-read-counts.xml utils_estimate-energy.xml utils_extract-boxed-sequences.xml utils_filter-annotated-entries.xml utils_filter-by-energy.xml utils_find-boxes.xml
diffstat 8 files changed, 35 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/segmentation-fold.xml	Thu May 19 05:30:49 2016 -0400
+++ b/segmentation-fold.xml	Thu May 19 05:41:48 2016 -0400
@@ -5,7 +5,7 @@
     </macros>
     
     <requirements>
-        @VERSION_COMMAND_SMF@
+        <requirement type="package" version="1.6.5">segmentation-fold</requirement>
     </requirements>
     <expand macro="stdio" />
     
--- a/tool_dependencies.xml	Thu May 19 05:30:49 2016 -0400
+++ b/tool_dependencies.xml	Thu May 19 05:41:48 2016 -0400
@@ -4,6 +4,17 @@
         <repository changeset_revision="68658583f5d2" name="package_segmentation_fold_1_6_5" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     
+
+    <package name="python" version="2.7.10">
+        <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="fe0870696ca7" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="pysam" version="0.8.2.1">
+        <repository changeset_revision="e6c1f548397a" name="package_pysam_0_8_2" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    
     <package name="segmentation-fold-utils" version="2.0.0">
         <repository changeset_revision="68658583f5d2" name="package_segmentation_fold_1_6_5" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
--- a/utils_add-read-counts.xml	Thu May 19 05:30:49 2016 -0400
+++ b/utils_add-read-counts.xml	Thu May 19 05:41:48 2016 -0400
@@ -6,7 +6,10 @@
     </macros>
     
     <requirements>
-        @REQUIREMENTS_UTILS@
+        <requirement type="package" version="2.7.10">python</requirement>
+        <requirement type="package" version="1.9">numpy</requirement>
+        <requirement type="package" version="0.8.2.1">pysam</requirement>
+        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
     </requirements>
     <expand macro="stdio" />
     
--- a/utils_estimate-energy.xml	Thu May 19 05:30:49 2016 -0400
+++ b/utils_estimate-energy.xml	Thu May 19 05:41:48 2016 -0400
@@ -6,8 +6,12 @@
     </macros>
     
     <requirements>
-        @REQUIREMENTS_SMF@
-        @REQUIREMENTS_UTILS@
+        <requirement type="package" version="1.6.5">segmentation-fold</requirement>
+        
+        <requirement type="package" version="2.7.10">python</requirement>
+        <requirement type="package" version="1.9">numpy</requirement>
+        <requirement type="package" version="0.8.2.1">pysam</requirement>
+        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
     </requirements>
     <expand macro="stdio" />
     
--- a/utils_extract-boxed-sequences.xml	Thu May 19 05:30:49 2016 -0400
+++ b/utils_extract-boxed-sequences.xml	Thu May 19 05:41:48 2016 -0400
@@ -6,7 +6,10 @@
     </macros>
     
     <requirements>
-        @REQUIREMENTS_UTILS@
+        <requirement type="package" version="2.7.10">python</requirement>
+        <requirement type="package" version="1.9">numpy</requirement>
+        <requirement type="package" version="0.8.2.1">pysam</requirement>
+        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
     </requirements>
     <expand macro="stdio" />
     
--- a/utils_filter-annotated-entries.xml	Thu May 19 05:30:49 2016 -0400
+++ b/utils_filter-annotated-entries.xml	Thu May 19 05:41:48 2016 -0400
@@ -6,7 +6,10 @@
     </macros>
     
     <requirements>
-        @REQUIREMENTS_UTILS@
+        <requirement type="package" version="2.7.10">python</requirement>
+        <requirement type="package" version="1.9">numpy</requirement>
+        <requirement type="package" version="0.8.2.1">pysam</requirement>
+        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
     </requirements>
     <expand macro="stdio" />
     
--- a/utils_filter-by-energy.xml	Thu May 19 05:30:49 2016 -0400
+++ b/utils_filter-by-energy.xml	Thu May 19 05:41:48 2016 -0400
@@ -6,7 +6,10 @@
     </macros>
     
     <requirements>
-        @REQUIREMENTS_UTILS@
+        <requirement type="package" version="2.7.10">python</requirement>
+        <requirement type="package" version="1.9">numpy</requirement>
+        <requirement type="package" version="0.8.2.1">pysam</requirement>
+        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
     </requirements>
     <expand macro="stdio" />
     
--- a/utils_find-boxes.xml	Thu May 19 05:30:49 2016 -0400
+++ b/utils_find-boxes.xml	Thu May 19 05:41:48 2016 -0400
@@ -11,6 +11,7 @@
         <requirement type="package" version="0.8.2.1">pysam</requirement>
         <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
     </requirements>
+    
     <expand macro="stdio" />
 
     <version_command>@VERSION_COMMAND_UTILS@</version_command>