Mercurial > repos > yhoogstrate > segmentation_fold

changeset 24:1c6654ab2492 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 00690c63c51a7f7563f2428c313d7fa75f2657e5-dirty
author yhoogstrate
date Thu, 28 Jul 2016 09:29:52 -0400
parents 23cad8b78b74
children 44330a54b8eb
files macros.xml tool_dependencies.xml utils_add-read-counts.xml utils_estimate-energy.xml utils_extract-boxed-sequences.xml utils_filter-annotated-entries.xml utils_filter-by-energy.xml utils_find-boxes.xml
diffstat 8 files changed, 12 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu May 26 10:12:29 2016 -0400
+++ b/macros.xml	Thu Jul 28 09:29:52 2016 -0400
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@VERSION@">smf-v1.6-5_utils-v1.0.3</token>
+    <token name="@VERSION@">smf-v1.6-5_utils-v2.0.1</token>
 
     <xml name="stdio">
         <stdio>
@@ -17,7 +17,7 @@
         <requirement type="package" version="1.9">numpy</requirement>
         <requirement type="package" version="0.8.2.1">pysam</requirement>
         <requirement type="package" version="0.6.1">htseq</requirement>
-        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
+        <requirement type="package" version="2.0.1">segmentation-fold-utils</requirement>
     ]]></token>
 
     <token name="@REQUIREMENTS_SMF@"><![CDATA[
--- a/tool_dependencies.xml	Thu May 26 10:12:29 2016 -0400
+++ b/tool_dependencies.xml	Thu Jul 28 09:29:52 2016 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="segmentation-fold" version="1.6.5">
-        <repository changeset_revision="6952a20fa81a" name="package_segmentation_fold_1_6_5" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="46c7b9079c8e" name="package_segmentation_fold_1_6_5__utils_2_0_1" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     
 
@@ -9,7 +9,7 @@
         <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="numpy" version="1.9">
-        <repository changeset_revision="fe0870696ca7" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="5f2b261ffc5b" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="pysam" version="0.8.2.1">
         <repository changeset_revision="e6c1f548397a" name="package_pysam_0_8_2" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
@@ -18,7 +18,7 @@
         <repository changeset_revision="25da74c1ff6d" name="package_htseq_0_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     
-    <package name="segmentation-fold-utils" version="2.0.0">
-        <repository changeset_revision="6952a20fa81a" name="package_segmentation_fold_1_6_5" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="segmentation-fold-utils" version="2.0.1">
+        <repository changeset_revision="46c7b9079c8e" name="package_segmentation_fold_1_6_5__utils_2_0_1" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>
--- a/utils_add-read-counts.xml	Thu May 26 10:12:29 2016 -0400
+++ b/utils_add-read-counts.xml	Thu Jul 28 09:29:52 2016 -0400
@@ -10,7 +10,7 @@
         <requirement type="package" version="1.9">numpy</requirement>
         <requirement type="package" version="0.8.2.1">pysam</requirement>
         <requirement type="package" version="0.6.1">htseq</requirement>
-        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
+        <requirement type="package" version="2.0.1">segmentation-fold-utils</requirement>
     </requirements>
     <expand macro="stdio" />
     
--- a/utils_estimate-energy.xml	Thu May 26 10:12:29 2016 -0400
+++ b/utils_estimate-energy.xml	Thu Jul 28 09:29:52 2016 -0400
@@ -10,7 +10,7 @@
         <requirement type="package" version="1.9">numpy</requirement>
         <requirement type="package" version="0.8.2.1">pysam</requirement>
         <requirement type="package" version="0.6.1">htseq</requirement>
-        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
+        <requirement type="package" version="2.0.1">segmentation-fold-utils</requirement>
 
         <requirement type="package" version="1.6.5">segmentation-fold</requirement>
     </requirements>
--- a/utils_extract-boxed-sequences.xml	Thu May 26 10:12:29 2016 -0400
+++ b/utils_extract-boxed-sequences.xml	Thu Jul 28 09:29:52 2016 -0400
@@ -10,7 +10,7 @@
         <requirement type="package" version="1.9">numpy</requirement>
         <requirement type="package" version="0.8.2.1">pysam</requirement>
         <requirement type="package" version="0.6.1">htseq</requirement>
-        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
+        <requirement type="package" version="2.0.1">segmentation-fold-utils</requirement>
     </requirements>
     <expand macro="stdio" />
     
--- a/utils_filter-annotated-entries.xml	Thu May 26 10:12:29 2016 -0400
+++ b/utils_filter-annotated-entries.xml	Thu Jul 28 09:29:52 2016 -0400
@@ -10,7 +10,7 @@
         <requirement type="package" version="1.9">numpy</requirement>
         <requirement type="package" version="0.8.2.1">pysam</requirement>
         <requirement type="package" version="0.6.1">htseq</requirement>
-        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
+        <requirement type="package" version="2.0.1">segmentation-fold-utils</requirement>
     </requirements>
     <expand macro="stdio" />
     
--- a/utils_filter-by-energy.xml	Thu May 26 10:12:29 2016 -0400
+++ b/utils_filter-by-energy.xml	Thu Jul 28 09:29:52 2016 -0400
@@ -10,7 +10,7 @@
         <requirement type="package" version="1.9">numpy</requirement>
         <requirement type="package" version="0.8.2.1">pysam</requirement>
         <requirement type="package" version="0.6.1">htseq</requirement>
-        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
+        <requirement type="package" version="2.0.1">segmentation-fold-utils</requirement>
     </requirements>
     <expand macro="stdio" />
     
--- a/utils_find-boxes.xml	Thu May 26 10:12:29 2016 -0400
+++ b/utils_find-boxes.xml	Thu Jul 28 09:29:52 2016 -0400
@@ -10,7 +10,7 @@
         <requirement type="package" version="1.9">numpy</requirement>
         <requirement type="package" version="0.8.2.1">pysam</requirement>
         <requirement type="package" version="0.6.1">htseq</requirement>
-        <requirement type="package" version="2.0.0">segmentation-fold-utils</requirement>
+        <requirement type="package" version="2.0.1">segmentation-fold-utils</requirement>
     </requirements>
     
     <expand macro="stdio" />