# HG changeset patch # User yhoogstrate # Date 1449048890 18000 # Node ID eccb5ee89df7a29426659fded521515a68c1f473 # Parent 9827a554e52fa424310ed33f33385c7a2b5b171e planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit b37cb65736e2a6e76b94a9fa12a5887046437e36-dirty diff -r 9827a554e52f -r eccb5ee89df7 segmentation-fold.xml --- a/segmentation-fold.xml Sun Aug 02 03:28:30 2015 -0400 +++ b/segmentation-fold.xml Wed Dec 02 04:34:50 2015 -0500 @@ -1,13 +1,13 @@ - + RNA-Folding including predefined segments including K-turns - segmentation-fold + segmentation-fold - segmentation-fold -V | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//' + segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//' $output_dbn ]]> @@ -184,13 +184,13 @@ Segmentation-fold is a bioinformatics application that predicts RNA 2D-structure with an extended version of the Zuker algorithm. This modification contains a new "structure element" named a segment and is -capable of folding a pre-defined substructure with multiple canonical +capable of folding a pre-defined substructures with multiple canonical or non-canonical pairings. -This allows folding of more complex structures like the K-turns, which -are also part of the implemented free energy tables. These thermodynamic -parameters (free Gibbs energy levels) have been estimated using a -computational approach and therefore lack accuracy. +This allows folding of more complex structures like K-turns, which are +also part of the implemented free energy table. These thermodynamic +parameters (free Gibbs energy) have been estimated using a in silico +approach and therefore lack high resolution. ]]> diff -r 9827a554e52f -r eccb5ee89df7 tool_dependencies.xml --- a/tool_dependencies.xml Sun Aug 02 03:28:30 2015 -0400 +++ b/tool_dependencies.xml Wed Dec 02 04:34:50 2015 -0500 @@ -1,6 +1,6 @@ - - + +