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diff test-data/SNORD114-4-revised.scan-for-segments.txt @ 4:21e619c46cb5 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 61ba605ef9eb63914a248fe389860daa2249af69
author yhoogstrate
date Wed, 02 Mar 2016 05:47:07 -0500
parents 59ab674be4b5
children 487f438da099
line wrap: on
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--- a/test-data/SNORD114-4-revised.scan-for-segments.txt	Mon Feb 29 10:43:37 2016 -0500
+++ b/test-data/SNORD114-4-revised.scan-for-segments.txt	Wed Mar 02 05:47:07 2016 -0500
@@ -1,49 +1,27 @@
->SNORD114-4 x Kt-CD-box.AGA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.UAA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-42.dra
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.CUG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.AGG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-42.eco
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Loop-E-Motif.bac
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.ACG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.ACA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-G2nA-SAMribo.bsu
+>SNORD114-4 x Kt-CD-box.UAU
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-CD-box.UGU
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.UGG
+>SNORD114-4 x Kt-CD-box.CAU
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-42.tth
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.UCA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.UCG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-7 G2nA SAM riboswitch (H. marismortui)
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.UAG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.GAA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.CGG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-15.hma
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
-.(((((((((.......))))))(.(.((((..((..((((((..........)))))).))..)))).).))))	.((((((.((.(((.((.....((((((.(....)....))))))..)...)))).......)).....))))))	-8.12001228333
->SNORD114-4 x Kt-CD-box.CAG
+.(((((((((.......)))))).((.((((..((..((((((..........)))))).))..))))..)))))	.((((((....(((.((.....((((......))))((....))...)...))))...(((....))).))))))	-6.4197063446
+>SNORD114-4 x Kt-U4b.hsa
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-U4b.hsa
+>SNORD114-4 x Kt-CD-box.GGU
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-7 (E. coli)
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
@@ -51,26 +29,14 @@
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-58.hma
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.UUG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-46.tth
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.AUG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.UUA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-SAM-ribo.tte
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-23.eco
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.GCG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.UGA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-38.hma
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.CCG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-46.dra
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-CD-box.CGU
@@ -81,44 +47,28 @@
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-46.eco
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.GAG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.CAA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-c-di-GMP-II.cac
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-11 (T. thermophilus)
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.AUA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.GGA
+>SNORD114-4 x Kt-CD-box.AAU
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-L30e.sce
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.CCA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-7 (T. thermophilus)
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.GCA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.GUG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-42.hma
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-U4a.hsa
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.CUA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.AAG
+>SNORD114-4 x Kt-G2nA-SAMribo.bsu
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
-.(((((((((.......))))))(.(.((((..((..((((((..........)))))).))..)))).).))))	((((((((((.......))))))(((......)))...)))).(((((...(.((.......)).)....)))))	-6.19940757751
->SNORD114-4 x Kt-CD-box.GUA
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.GGG
-CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
->SNORD114-4 x Kt-CD-box.CGA
+>SNORD114-4 x Kt-CD-box.GAU
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-11.eco
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
 >SNORD114-4 x Kt-46.hma
 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
+>SNORD114-4 x Kt-CD-box.AGU
+CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
+.(((((((((.......)))))).((.((((..((..((((((..........)))))).))..))))..)))))	.((((((...(((((.......((((......)))).((((((..........)))))).....)))))))))))	1.99971199036