comparison scan-for-segments.xml @ 6:a61db7f9d80b draft

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 30448244448344cd393d444ef23b27318165cbdb-dirty

5:fd7f0bf0f5b6

<tool id="scan_for_segments" name="scan-for-segments" version="1.6.2-0">
    <description>Scan for the presence of segments in sequences using segmentation-fold</description>
    
    <requirements>
        <requirement type="package" version="1.6.2">segmentation-fold</requirement>
    </requirements>
    
    <stdio></stdio>
    
    <version_command>segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//'</version_command>
    
    <command><![CDATA[
        scan-for-segments
            -T \${GALAXY_SLOTS:-4}
            #if $parameters.use_custom_xml == "true"
                -x "${parameters.input_xml}"
            #else
                -x "\$SEGMENTATION_FOLD_DEFAULT_XML"
            #end if
            -p "in-depth"

6:a61db7f9d80b

<tool id="scan_for_segments" name="scan-for-segments" version="1.6.2-1">
    <description>Scan for the presence of segments in sequences using segmentation-fold</description>
    
    <requirements>
        <requirement type="package" version="1.6.2">segmentation-fold</requirement>
        <requirement type="package" version="2.7.10">python</requirement>
    </requirements>
    
    <stdio></stdio>
    
    <version_command>segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//'</version_command>
    
    <command><![CDATA[
        scan-for-segments
            -T \${GALAXY_SLOTS:-4}
            #if str($parameters.use_custom_xml) == "true"
                -x "${parameters.input_xml}"
            #else
                -x "\$SEGMENTATION_FOLD_DEFAULT_XML"
            #end if
            -p "in-depth"