Mercurial > repos > yhoogstrate > segmentation_fold
comparison energy-estimation-utility.xml @ 4:21e619c46cb5 draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 61ba605ef9eb63914a248fe389860daa2249af69
| author | yhoogstrate |
|---|---|
| date | Wed, 02 Mar 2016 05:47:07 -0500 |
| parents | 59ab674be4b5 |
| children | fd7f0bf0f5b6 |
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| 3:59ab674be4b5 | 4:21e619c46cb5 |
|---|---|
| 1 <tool id="energy_estimation_utility" name="energy-estimation-utility" version="1.6.0_0"> | 1 <tool id="energy_estimation_utility" name="energy-estimation-utility" version="1.6.0"> |
| 2 <description>Estimate the maximal energy a segment needs to assign to become part of the optimal structure using segmentation-fold</description> | 2 <description>Estimate the maximal energy a segment needs to assign to become part of the optimal structure using segmentation-fold</description> |
| 3 | 3 |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="1.6.0">segmentation-fold</requirement> | 5 <requirement type="package" version="1.1.0">segmentation-fold</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 | 7 |
| 8 <stdio></stdio> | 8 <stdio></stdio> |
| 9 | 9 |
| 10 <version_command>segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//'</version_command> | 10 <version_command>segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//'</version_command> |
| 75 <param name="use_custom_xml" value="true" /> | 75 <param name="use_custom_xml" value="true" /> |
| 76 <param name="input_xml" value="segments_truncated.xml" ftype="xml" /> | 76 <param name="input_xml" value="segments_truncated.xml" ftype="xml" /> |
| 77 <param name="do_randomization" value="false" /> | 77 <param name="do_randomization" value="false" /> |
| 78 <param name="shuffle_n_times" value="0" /> | 78 <param name="shuffle_n_times" value="0" /> |
| 79 | 79 |
| 80 <output name="output_list" file="segments_truncated.out.txt" /> | 80 <output name="output_list" file="segments_truncated.out.txt" lines_diff="2" /><!-- Accept rounding errors by diff CPU's etc. --> |
| 81 </test> | 81 </test> |
| 82 <test> | 82 <test> |
| 83 <param name="use_custom_xml" value="true" /> | 83 <param name="use_custom_xml" value="true" /> |
| 84 <param name="input_xml" value="segments_truncated.xml" ftype="xml" /> | 84 <param name="input_xml" value="segments_truncated.xml" ftype="xml" /> |
| 85 <param name="do_randomization" value="false" /> | 85 <param name="do_randomization" value="false" /> |
| 86 <param name="shuffle_n_times" value="1" /> | 86 <param name="shuffle_n_times" value="1" /> |
| 87 | 87 |
| 88 <output name="output_list" file="segments_truncated.out.txt" lines_diff="8" /> | 88 <output name="output_list" file="segments_truncated.2.out.txt" lines_diff="10" /> |
| 89 </test> | 89 </test> |
| 90 </tests> | 90 </tests> |
| 91 | 91 |
| 92 <help><![CDATA[ | 92 <help><![CDATA[ |
| 93 The tool uses the sequences from the xml file. | 93 The tool uses the sequences from the xml file. |