Mercurial > repos > yhoogstrate > samtools_view_header

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author yhoogstrate
date Thu, 20 Nov 2014 03:55:28 -0500
parents 1a77794c72ed
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2:1a77794c72ed 3:257f28d66de8
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="samtools_view_header" name="Samtools view header"> 2 <tool id="samtools_view_header" name="Samtools view header" version="0.1.19.a">
3 <description>Show only the header of a BAM or SAM file using samtools.</description> 3 <description>Show only the header of a BAM or SAM file using samtools.</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="5.9">ncurses</requirement> 5 <requirement type="package" version="5.9">ncurses</requirement>
6 <requirement type="package" version="0.1.19">samtools</requirement> 6 <requirement type="package" version="0.1.19">samtools</requirement>
7 </requirements> 7 </requirements>
8
9 <version_command>samtools 2&gt;&amp;1 | grep -i "version:"</version_command>
10
8 <command> 11 <command>
9 samtools 12 samtools
10 view 13 view
11 -H 14 -H
12 #if $alignment.dataset.ext.lower() == "sam" 15 #if $alignment.dataset.ext.lower() == "sam"
44 47
45 **License** 48 **License**
46 49
47 * samtools: MIT License 50 * samtools: MIT License
48 51
49 **Contact** 52 Contact
53 -------
50 54
51 The tool wrapper has been written by Youri Hoogstrate from the Erasmus Medical Center (Rotterdam, Netherlands) on behalf of the Translational Research IT (TraIT) project: 55 The tool wrapper has been written by Youri Hoogstrate from the Erasmus
56 Medical Center (Rotterdam, Netherlands) on behalf of the Translational
57 Research IT (TraIT) project:
58
52 http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch 59 http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch
53 60
54 More tools by the Translational Research IT (TraIT) project can be found in the following repository: 61 More tools by the Translational Research IT (TraIT) project can be found
62 in the following toolsheds:
63
55 http://toolshed.dtls.nl/ 64 http://toolshed.dtls.nl/
65
66 http://toolshed.g2.bx.psu.edu
67
68 http://testtoolshed.g2.bx.psu.edu/
56 </help> 69 </help>
57 </tool> 70 </tool>