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1 Samtools (view -H) wrapper for Galaxy
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2 =====================================
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3
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4 http://samtools.sourceforge.net/
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5
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6 Quickly show the header lines of a SAM / BAM file.
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7
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8 Development
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9 -----------
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10
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11 * Repository-Maintainer: Youri Hoogstrate
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12
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13 * Repository-Development: https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools
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14
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15 The tool wrapper has been written by Youri Hoogstrate from the Erasmus
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16 Medical Center (Rotterdam, Netherlands) on behalf of the Translational
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17 Research IT (TraIT) project:
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18
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19 http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch
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20
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21 More tools by the Translational Research IT (TraIT) project can be found in the following repository:
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22
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23 http://toolshed.dtls.nl/
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24
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25 License
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26 -------
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27
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28 **samtools**:
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29
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30 MIT/Expat License: https://raw.githubusercontent.com/samtools/samtools/develop/LICENSE
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31
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32 The MIT/Expat License
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33
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34 Copyright (C) 2008-2014 Genome Research Ltd.
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35
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36 Permission is hereby granted, free of charge, to any person obtaining a copy
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37 of this software and associated documentation files (the "Software"), to deal
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38 in the Software without restriction, including without limitation the rights
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39 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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40 copies of the Software, and to permit persons to whom the Software is
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41 furnished to do so, subject to the following conditions:
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42
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43 The above copyright notice and this permission notice shall be included in
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44 all copies or substantial portions of the Software.
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45
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46 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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47 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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48 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
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49 THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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50 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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51 FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
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52 DEALINGS IN THE SOFTWARE.
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53
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54 [The use of a range of years within a copyright notice in this distribution
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55 should be interpreted as being equivalent to a list of years including the
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56 first and last year specified and all consecutive years between them.
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57
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58 For example, a copyright notice that reads "Copyright (C) 2005, 2007-2009,
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59 2011-2012" should be interpreted as being identical to a notice that reads
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60 "Copyright (C) 2005, 2007, 2008, 2009, 2011, 2012" and a copyright notice
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61 that reads "Copyright (C) 2005-2012" should be interpreted as being identical
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62 to a notice that reads "Copyright (C) 2005, 2006, 2007, 2008, 2009, 2010,
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63 2011, 2012".]
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64
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65 **This wrapper**:
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66
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67 Copyright (C) 2013-2014 Youri Hoogstrate
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68
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69 This program is free software: you can redistribute it and/or modify
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70 it under the terms of the GNU General Public License as published by
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71 the Free Software Foundation, either version 3 of the License, or
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72 (at your option) any later version.
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73
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74 This program is distributed in the hope that it will be useful,
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75 but WITHOUT ANY WARRANTY; without even the implied warranty of
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76 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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77 GNU General Public License for more details.
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78
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79 You should have received a copy of the GNU General Public License
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80 along with this program. If not, see <http://www.gnu.org/licenses/>.
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