Mercurial > repos > yhoogstrate > package_segmentation_fold_1_6_5
comparison tool_dependencies.xml @ 5:f4d86e60a88f draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit c6608bd5256e5c54cb2e01be6c184da0d2b08a7c-dirty
| author | yhoogstrate |
|---|---|
| date | Thu, 19 May 2016 05:00:26 -0400 |
| parents | e3ef4c5b6f19 |
| children | 07eb49b16277 |
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| 4:e3ef4c5b6f19 | 5:f4d86e60a88f |
|---|---|
| 49 cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR . && | 49 cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR . && |
| 50 make && | 50 make && |
| 51 make check && | 51 make check && |
| 52 make install | 52 make install |
| 53 </action> | 53 </action> |
| 54 </actions> | |
| 55 </install> | |
| 56 <readme> | |
| 57 Installation of segmentation-fold requires: | |
| 58 - libboost (via toolshed) | |
| 59 - CMake (via toolshed) | |
| 60 - c++11 compliant compiler: g++ or clang | |
| 61 </readme> | |
| 62 </package> | |
| 63 | |
| 64 <package name="segmentation-fold-utils" version="2.0.0"> | |
| 65 <install version="1.0"> | |
| 66 <actions> | |
| 67 <action sha256sum="f7dfbc70313aa2502dd35692f33bf06ef32c17594a526ea054cf369837aad794" type="download_by_url">https://github.com/yhoogstrate/segmentation-fold/archive/3cce35ab2265caf186c492764afb5a71ae55d80d.tar.gz</action> | |
| 54 | 68 |
| 55 <!-- Also install the python utils --> | 69 <!-- Also install the python utils --> |
| 56 <action type="set_environment_for_install"> | 70 <action type="set_environment_for_install"> |
| 57 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | 71 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 58 <package name="python" version="2.7.10" /> | 72 <package name="python" version="2.7.10" /> |
| 85 <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable> | 99 <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable> |
| 86 </action> | 100 </action> |
| 87 </actions> | 101 </actions> |
| 88 </install> | 102 </install> |
| 89 <readme> | 103 <readme> |
| 90 Installation of segmentation-fold requires: | 104 Installation of segmentation-fold-utils requires: |
| 91 - libboost (via toolshed) | 105 - Python (via toolshed) |
| 92 - CMake (via toolshed) | 106 - numpy (via toolshed) |
| 93 - Python (for energy utils) (via toolshed) | 107 - pysam (via toolshed) |
| 94 - c++11 compliant compiler: g++ or clang | |
| 95 </readme> | 108 </readme> |
| 96 </package> | 109 </package> |
| 97 </tool_dependency> | 110 </tool_dependency> |