# HG changeset patch
# User yhoogstrate
# Date 1456833587 18000
# Node ID d5d88390d6cb87f77cd64a756a7e0cdc0974d67b

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 4b12ac5efae0802d2614747a639475d8778a68b4

diff -r 000000000000 -r d5d88390d6cb tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Mar 01 06:59:47 2016 -0500
@@ -0,0 +1,48 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="boost" version="1.57">
+        <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    
+    <package name="cmake" version="3.2.3">
+        <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    
+    <package name="segmentation-fold" version="1.6.2">
+        <install version="1.0">
+            <actions>
+                <action sha256sum="1ac1909d9c73caf9ce7592f79bcb15e265a578088656a07729680b8ea2399800" type="download_by_url">https://github.com/yhoogstrate/segmentation-fold/archive/v1.6.2.tar.gz</action>
+                    
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="boost" version="1.57" />
+                    </repository>
+                </action>
+                
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="cmake" version="3.2.3" />
+                    </repository>
+                </action>
+                
+                <action type="shell_command">
+                    cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR .  &amp;&amp;
+                    make                                                                    &amp;&amp;
+                    make install                                                            &amp;&amp;
+                    make check
+                </action>
+                
+                <action type="set_environment">
+                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                     <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Installation of segmentation-fold requires:
+             - libboost                     (via toolshed)
+             - CMake                        (via toolshed)
+             - c++11 compiler: g++ or clang
+        </readme>
+    </package>
+</tool_dependency>