Mercurial > repos > yhoogstrate > package_segmentation_fold_1_6_2

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 4b12ac5efae0802d2614747a639475d8778a68b4
author yhoogstrate
date Tue, 01 Mar 2016 06:59:47 -0500
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children 34af794144dc
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<?xml version="1.0"?>
<tool_dependency>
    <package name="boost" version="1.57">
        <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    
    <package name="cmake" version="3.2.3">
        <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    
    <package name="segmentation-fold" version="1.6.2">
        <install version="1.0">
            <actions>
                <action sha256sum="1ac1909d9c73caf9ce7592f79bcb15e265a578088656a07729680b8ea2399800" type="download_by_url">https://github.com/yhoogstrate/segmentation-fold/archive/v1.6.2.tar.gz</action>
                    
                <action type="set_environment_for_install">
                    <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="boost" version="1.57" />
                    </repository>
                </action>
                
                <action type="set_environment_for_install">
                    <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="cmake" version="3.2.3" />
                    </repository>
                </action>
                
                <action type="shell_command">
                    cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR .  &amp;&amp;
                    make                                                                    &amp;&amp;
                    make install                                                            &amp;&amp;
                    make check
                </action>
                
                <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Installation of segmentation-fold requires:
             - libboost                     (via toolshed)
             - CMake                        (via toolshed)
             - c++11 compiler: g++ or clang
        </readme>
    </package>
</tool_dependency>