Mercurial > repos > yhoogstrate > package_segmentation_fold_1_0_0
annotate tool_dependencies.xml @ 1:73c1fc0ae03f draft default tip
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit b37cb65736e2a6e76b94a9fa12a5887046437e36
| author | yhoogstrate |
|---|---|
| date | Sun, 02 Aug 2015 03:28:08 -0400 |
| parents | f8ac4d4dc4cf |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="boost" version="1.57"> | |
| 4 <repository changeset_revision="e3977e321db5" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 | |
| 7 <package name="cmake" version="3.2.3"> | |
| 8 <repository changeset_revision="e932c7599efd" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 9 </package> | |
| 10 | |
| 11 <package name="segmentation-fold" version="1.0.0"> | |
| 12 <install version="1.0"> | |
| 13 <actions> | |
| 14 <action type="shell_command">git clone https://github.com/yhoogstrate/segmentation-fold.git</action> | |
| 15 <action type="shell_command">git reset --hard 61db54315e45f2b96a241e319d99b119b26fa072</action> | |
| 16 | |
| 17 <action type="set_environment_for_install"> | |
| 18 <repository changeset_revision="e3977e321db5" name="package_boost_1_57" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 19 <package name="boost" version="1.57" /> | |
| 20 </repository> | |
| 21 </action> | |
| 22 | |
| 23 <action type="set_environment_for_install"> | |
| 24 <repository changeset_revision="e932c7599efd" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 25 <package name="cmake" version="3.2.3" /> | |
| 26 </repository> | |
| 27 </action> | |
| 28 | |
| 29 <action type="shell_command"> | |
| 30 cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR . && | |
| 31 make && | |
| 32 make install | |
| 33 </action> | |
| 34 | |
| 35 <action type="set_environment"> | |
| 36 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 37 <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable> | |
| 38 </action> | |
| 39 </actions> | |
| 40 </install> | |
| 41 <readme> | |
|
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73c1fc0ae03f
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit b37cb65736e2a6e76b94a9fa12a5887046437e36
yhoogstrate
parents:
0
diff
changeset
|
42 Installation of segmentation-fold requires: |
| 0 | 43 - git |
| 44 - libboost (via toolshed) | |
| 45 - CMake (via toolshed) | |
| 46 - c++11 compiler: g++ or clang | |
| 47 </readme> | |
| 48 </package> | |
| 49 </tool_dependency> |