diff tool_dependencies.xml @ 23:e35fa4fad2e7 draft

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d3d741a1024b4d689cb0b319fd6231acefdda8e8-dirty

--- a/tool_dependencies.xml	Wed Nov 04 10:10:35 2015 -0500
+++ b/tool_dependencies.xml	Thu Nov 12 05:03:43 2015 -0500
@@ -1,13 +1,14 @@
 <?xml version="1.0"?>
 <tool_dependency>
+    <package name="python" version="2.7">
+        <repository changeset_revision="9cdf46934080" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
     <package name="nose" version="1.3.7">
         <repository changeset_revision="2e16c2edb44d" name="package_nose_1_3_7" owner="yhoogstrate" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    
     <package name="numpy" version="1.9">
         <repository changeset_revision="816d3480b0b1" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    
     <package name="cython" version="0.23.1">
         <repository changeset_revision="5212151afa22" name="package_cython_0_23_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
@@ -18,6 +19,9 @@
                 <action sha256sum="eb983c8d0ff0331f069e2378768d8988b6b9d8dd303a0f0f0cef9d882256af85" type="download_by_url">http://sourceforge.net/projects/crossmap/files/CrossMap-0.2.tar.gz</action>
                 
                 <action type="setup_python_environment">
+                    <repository changeset_revision="9cdf46934080" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="python" version="2.7" />
+                    </repository>
                     <repository changeset_revision="2e16c2edb44d" name="package_nose_1_3_7" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="nose" version="1.3.7" />
                     </repository>
@@ -29,8 +33,8 @@
                     </repository>
                 </action>
                 
-                <!-- If CrossMap is installed with - - home or - - prefix
-                into, it often crashes with a 'write-test' error
+                <!-- If CrossMap is installed with   - - home   or   - - prefix
+                it often crashes with a 'write-test' error
                 
                 Using - - root places the installation in:
                 $INSTALL_DIR / (python path dir) /
@@ -45,7 +49,7 @@
                 </action>
                 
                 <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR"/lib/python2.7/site-packages"</environment_variable>
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     
                     <environment_variable action="set_to" name="PATH_CROSSMAP">$INSTALL_DIR/bin</environment_variable>