Mercurial > repos > yhoogstrate > package_crossmap_0_2

diff tool_dependencies.xml @ 8:ccdba4e903ca draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb-dirty
author yhoogstrate
date Thu, 27 Aug 2015 05:29:48 -0400
parents 78cc94761311
children a6bb0ac6c402
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line diff
--- a/tool_dependencies.xml	Thu Aug 27 05:24:37 2015 -0400
+++ b/tool_dependencies.xml	Thu Aug 27 05:29:48 2015 -0400
@@ -41,6 +41,8 @@
                 Therefore install it with a manual shell_command instead
                 of <package></package> inside a pyton_env. -->
                 <action type="shell_command">
+                    which python ; 
+                    
                     sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1(sig_list)/" "bin/CrossMap.py" ;
                     
                     export PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg:$PYTHONPATH" &amp;&amp;