Mercurial > repos > yhoogstrate > package_crossmap_0_2

diff tool_dependencies.xml @ 3:8ec1bf2ae8a9 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 3d756e33e5a551c55cfb91fd95785ce102a8c41f-dirty
author yhoogstrate
date Wed, 26 Aug 2015 10:57:21 -0400
parents 84b0390c3868
children ef54bc5a5347
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--- a/tool_dependencies.xml	Wed Aug 26 10:46:57 2015 -0400
+++ b/tool_dependencies.xml	Wed Aug 26 10:57:21 2015 -0400
@@ -26,7 +26,7 @@
                 Therefore install it with a manual shell_command instead
                 of <package></package> inside a pyton_env. -->
                 <action type="shell_command">
-                    sed -i.bak -r 's/numpy.(sum|nan_to_num)+/np.\1(sig_list)/' bin/CrossMap.py &amp;&amp;<!-- bigwig fix, unpatched in 0.2 -->
+                    sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1(sig_list)/" "bin/CrossMap.py" ;
                     
                     export PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg:$PYTHONPATH" &amp;&amp;