Mercurial > repos > yhoogstrate > package_crossmap_0_2

comparison tool_dependencies.xml @ 20:c0b7bf565723 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 290b453ad2abdb65322ec2e50889aaf2b03bb095-dirty
author yhoogstrate
date Fri, 28 Aug 2015 09:08:31 -0400
parents f66d679d8f5d
children ff58cb74118d
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19:f66d679d8f5d 20:c0b7bf565723
39 sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1/" "bin/CrossMap.py" ; 39 sed -i.bak -r "s/numpy.(sum|nan_to_num)+/np.\1/" "bin/CrossMap.py" ;
40 40
41 python setup.py install --root $INSTALL_DIR && 41 python setup.py install --root $INSTALL_DIR &&
42 export SUB_DIR=$(dirname $(which python)) && 42 export SUB_DIR=$(dirname $(which python)) &&
43 echo $SUB_DIR && 43 echo $SUB_DIR &&
44 mv $INSTALL_DIR$SUB_DIR/bin $INSTALL_DIR && 44 mv $INSTALL_DIR$SUB_DIR $INSTALL_DIR/bin &&
45 mv $INSTALL_DIR$SUB_DIR/lib $INSTALL_DIR/../lib 45 mv $INSTALL_DIR$SUB_DIR/../lib $INSTALL_DIR/lib
46 </action> 46 </action>
47 47
48 <action type="set_environment"> 48 <action type="set_environment">
49 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> 49 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
50 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR"/lib/python"</environment_variable> 50 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR"/lib/python"</environment_variable>