# HG changeset patch
# User yhoogstrate
# Date 1437562822 14400
# Node ID 7fe7624f4d756258e88fbb9f37d31f98c8c0ae7b
# Parent  1aa390656b37047321b37c35fbe1a18aefcdde3b
Uploaded

diff -r 1aa390656b37 -r 7fe7624f4d75 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jul 22 06:54:43 2015 -0400
+++ b/tool_dependencies.xml	Wed Jul 22 07:00:22 2015 -0400
@@ -11,19 +11,22 @@
     <package name="crossmap" version="0.1.8">
         <install version="1.0">
             <actions>
+                <action type="download_by_url">http://sourceforge.net/projects/crossmap/files/CrossMap-0.1.8.tar.gz</action>
+                
                 <action type="setup_python_environment">
                     <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="cython" version="0.20.1" />
                     </repository>
-                </action>
-                
-                <action type="shell_command">echo $CYTHON_PATH &gt; /tmp/test1.txt ; echo $PYTHONPATH &gt; /tmp/test2.txt ; export PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg:$PYTHONPATH" ; echo $PYTHONPATH &gt; /tmp/test3.txt</action>
-                
-                <action type="setup_python_environment">
                     <repository changeset_revision="507f3ab4e38d" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="numpy" version="1.9" />
                     </repository>
-                    <package>http://sourceforge.net/projects/crossmap/files/CrossMap-0.1.8.tar.gz</package>
+                </action>
+                
+                <action type="shell_command">
+                    export PYTHONPATH="$CYTHON_PATH/lib/python/Cython-0.20.1-py2.7-linux-x86_64.egg:$PYTHONPATH" &amp;&amp;
+                    echo $PYTHONPATH &gt; /tmp/test3.txt
+                
+                    python setup.py install --root=$INSTALL_DIR    
                 </action>
                 
                 <action type="set_environment">